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ConsensusPathDB pathway analysis 26 Apr 2012 | 01:29 am

ConsensusPathDB is a database that integrates pathway and interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database and others. ConsensusPathDB contains biochemical reactions...

graphconversion 11 Jun 2010 | 05:18 am

This service converts a network in gml, gdl, KGML or tab-delimited format into a network in gml, gdl, pajek, tab-delimited, dot or VisML format.

metabolicgraphconstruction 11 Jun 2010 | 05:02 am

The KEGG network provider constructs organism-specific metabolic networks from the KEGG PATHWAY KGML files.

pathwayinference 11 Jun 2010 | 04:34 am

The pathway extraction service connects groups of seed nodes in a weighted graph.

pathfinding 11 Jun 2010 | 12:20 am

The pathfinding service enumerates the k shortest paths between a set of source and target nodes in a weighted graph. It is a wrapper of REA developped by Jimenez and Marzal.

CorEx 5 May 2010 | 03:51 pm

About CorEx: How to infer from transcription data, which sets of transcription factors regulate a given group of genes, is a difficult task. Tackling this problem generally involves three steps: i) de...

mprap 21 Apr 2010 | 02:23 am

mprap predicts the relative surface accessibility of a protein sequence. The predictor is optimized for membrane proteins.

WHAT IF Web Services 29 Jan 2010 | 03:11 am

WHAT-IF Web Services, see http://swift.cmbi.ru.nl/whatif and http://wiws.cmbi.ru.nl/help for more information.

engineDB_08_09 3 Dec 2009 | 09:19 pm

engineDB is a repository for precalculated functional analogouse gene products using the gene ontology (GO) annotation to calculate the functional analogy by semantic similarity. The GO data used are...

MkDom2 3 Jun 2009 | 02:01 am

MkDom2 is the program used routinely to build each new release of ProDom. The algorithm relies on the assumption that the shortest amino acid sequence corresponds to a single domain, and may be used a...

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